HL_4V88_056
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 4V88|1|A1|A|2637, 4V88|1|A1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_056 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.0391
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
4V88|1|A1|U|2633
4V88|1|A1|U|2634
4V88|1|A1|A|2635
4V88|1|A1|A|2636
4V88|1|A1|A|2637
4V88|1|A1|C|2638
4V88|1|A1|G|2639
4V88|1|A1|A|2640
4V88|1|A1|U|2641
4V88|1|A1|A|2642
4V88|1|A1|A|2643
4V88|1|A1|C|2644
4V88|1|A1|G|2645
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- 60S ribosomal protein L21-A
- Chain Bb
- 60S ribosomal protein L29
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