HL_4V88_062

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0583

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|C|2840
4V88|1|A1|G|2841
4V88|1|A1|U|2842
4V88|1|A1|U|2843
4V88|1|A1|C|2844
4V88|1|A1|A|2845
4V88|1|A1|U|2846
4V88|1|A1|A|2847
4V88|1|A1|G|2848

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

60S ribosomal protein L40