HL_4V88_067

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_067 not in the Motif Atlas

Homologous match to HL_5TBW_066

Geometric discrepancy: 0.0546

The information below is about HL_5TBW_066

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V88|1|A1|U|3068
4V88|1|A1|G|3069
4V88|1|A1|A|3070
4V88|1|A1|U|3071
4V88|1|A1|C|3072
4V88|1|A1|A|3073

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19-A

Chain BU

60S ribosomal protein L22-A

Chain Bd

60S ribosomal protein L31-A