Motif HL_65794.1 Version HL_65794.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4GXY_003 | 4GXY | 0.4792 | 1 | Pseudoknot geometry | A | Adenosylcobalamin riboswitch | G | 65 | C | 67 | C | 68 | C | 69 | G | 70 | C | 71 | cWW |
| 2 | HL_4PQV_002 | 4PQV | 0.4106 | 1 | Pseudoknot geometry | A | Flavivirus 3' UTR stem loop IV | C | 28 | G | 29 | C | 30 | C | 31 | G | 32 | G | 34 | cWW |
| 3 | HL_4WF9_061 | 4WF9 | 0.2535 | 0 | Ribsomal LSU H95 | X | LSU rRNA | U | 2728 | G | 2729 | C | 2730 | C | 2731 | A | 2732 | A | 2733 | cWW |
| 4 | HL_7A0S_064 | 7A0S | 0.1958 | 0 | Ribsomal LSU H95 | X | LSU rRNA | U | 2680 | A | 2681 | C | 2682 | C | 2683 | A | 2684 | A | 2685 | cWW |
| 5 | HL_5J7L_198 | 5J7L | 0.2202 | 0 | Ribsomal LSU H95 | DA | LSU rRNA | U | 2701 | G | 2702 | C | 2703 | C | 2704 | A | 2705 | A | 2706 | cWW |
| 6 | HL_6UFM_005 | 6UFM | 0.2114 | 0 | Pseudoknot geometry | B | RNA (98-MER) | G | 50 | G | 51 | A | 52 | A | 53 | A | 54 | C | 55 | cWW |
| 7 | HL_4V9F_067 | 4V9F | 0.1515 | 0 | Ribsomal LSU H95 | 0 | LSU rRNA | C | 2737 | G | 2738 | A | 2739 | G | 2740 | A | 2741 | G | 2742 | cWW |
| 8 | HL_8C3A_067 | 8C3A | 0.0000 | 0 | Ribsomal LSU H95 | 1 | LSU rRNA | U | 3040 | G | 3041 | A | 3042 | U | 3043 | C | 3044 | A | 3045 | cWW |
| 9 | HL_5TBW_066 | 5TBW | 0.0844 | 0 | Ribsomal LSU H95 | 1 | LSU rRNA | U | 3068 | G | 3069 | A | 3070 | U | 3071 | C | 3072 | A | 3073 | cWW |
| 10 | HL_1U6B_002 | 1U6B | 0.3823 | 0 | Pseudoknot geometry | B | 197-MER | C | 70 | G | 71 | C | 72 | C | 73 | C | 74 | G | 75 | cWW |
| 11 | HL_3R4F_005 | 3R4F | 0.4058 | 0 | Pseudoknot geometry | A | pRNA | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCCAA | 2 |
| UGAUCA | 2 |
| GUCCCGC | 1 |
| CGCCGAG | 1 |
| UACCAA | 1 |
| GGAAAC | 1 |
| CGAGAG | 1 |
| CGCCCG | 1 |
| UGGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCA | 2 |
| GAUC | 2 |
| UCCCG | 1 |
| GCCGA | 1 |
| ACCA | 1 |
| GAAA | 1 |
| GAGA | 1 |
| GCCC | 1 |
| GGUU | 1 |
- Annotations
-
- Ribsomal LSU H95 (6)
- Pseudoknot geometry (5)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.33 | Max 0.68
Coloring options: