#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-6
1 HL_4GXY_0034GXY0.47921Pseudoknot geometryAAdenosylcobalamin riboswitchG65C67C68C69G70C71cWW
2 HL_4PQV_0024PQV0.41061Pseudoknot geometryAFlavivirus 3' UTR stem loop IVC28G29C30C31G32G34cWW
3 HL_4WF9_0614WF90.25350Ribsomal LSU H95X LSU rRNAU2728G2729C2730C2731A2732A2733cWW
4 HL_7A0S_0647A0S0.19580Ribsomal LSU H95X LSU rRNAU2680A2681C2682C2683A2684A2685cWW
5 HL_5J7L_1985J7L0.22020Ribsomal LSU H95DA LSU rRNAU2701G2702C2703C2704A2705A2706cWW
6 HL_6UFM_0056UFM0.21140Pseudoknot geometryBRNA (98-MER)G50G51A52A53A54C55cWW
7 HL_4V9F_0674V9F0.15150Ribsomal LSU H950 LSU rRNAC2737G2738A2739G2740A2741G2742cWW
8 HL_8C3A_0678C3A0.00000Ribsomal LSU H951 LSU rRNAU3040G3041A3042U3043C3044A3045cWW
9 HL_5TBW_0665TBW0.08440Ribsomal LSU H951 LSU rRNAU3068G3069A3070U3071C3072A3073cWW
10 HL_1U6B_0021U6B0.38230Pseudoknot geometryB197-MERC70G71C72C73C74G75cWW
11 HL_3R4F_0053R4F0.40580Pseudoknot geometryApRNAU52G53G54U55U56G57ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGCCAA2
UGAUCA2
GUCCCGC1
CGCCGAG1
UACCAA1
GGAAAC1
CGAGAG1
CGCCCG1
UGGUUG1
Non-Watson-Crick part of the motif
SequenceCounts
GCCA2
GAUC2
UCCCG1
GCCGA1
ACCA1
GAAA1
GAGA1
GCCC1
GGUU1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusNew id, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Ribsomal LSU H95 (6)
  • Pseudoknot geometry (5)
  • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.08 | Avg 0.33 | Max 0.68
    Help

    Coloring options:

    HL_4GXY_003:HL_4GXY_003 = 0HL_4GXY_003:HL_4PQV_002 = 0.5878HL_4GXY_003:HL_4WF9_061 = 0.4851HL_4GXY_003:HL_7A0S_064 = 0.4893HL_4GXY_003:HL_5J7L_198 = 0.5179HL_4GXY_003:HL_6UFM_005 = 0.5086HL_4GXY_003:HL_4V9F_067 = 0.5101HL_4GXY_003:HL_8C3A_067 = 0.4792HL_4GXY_003:HL_5TBW_066 = 0.4654HL_4GXY_003:HL_1U6B_002 = 0.5842HL_4GXY_003:HL_3R4F_005 = 0.6797HL_4PQV_002:HL_4GXY_003 = 0.5878HL_4PQV_002:HL_4PQV_002 = 0HL_4PQV_002:HL_4WF9_061 = 0.3782HL_4PQV_002:HL_7A0S_064 = 0.4043HL_4PQV_002:HL_5J7L_198 = 0.3917HL_4PQV_002:HL_6UFM_005 = 0.3975HL_4PQV_002:HL_4V9F_067 = 0.4482HL_4PQV_002:HL_8C3A_067 = 0.4106HL_4PQV_002:HL_5TBW_066 = 0.4069HL_4PQV_002:HL_1U6B_002 = 0.5536HL_4PQV_002:HL_3R4F_005 = 0.5974HL_4WF9_061:HL_4GXY_003 = 0.4851HL_4WF9_061:HL_4PQV_002 = 0.3782HL_4WF9_061:HL_4WF9_061 = 0HL_4WF9_061:HL_7A0S_064 = 0.143HL_4WF9_061:HL_5J7L_198 = 0.1471HL_4WF9_061:HL_6UFM_005 = 0.2561HL_4WF9_061:HL_4V9F_067 = 0.2578HL_4WF9_061:HL_8C3A_067 = 0.2535HL_4WF9_061:HL_5TBW_066 = 0.2513HL_4WF9_061:HL_1U6B_002 = 0.4256HL_4WF9_061:HL_3R4F_005 = 0.458HL_7A0S_064:HL_4GXY_003 = 0.4893HL_7A0S_064:HL_4PQV_002 = 0.4043HL_7A0S_064:HL_4WF9_061 = 0.143HL_7A0S_064:HL_7A0S_064 = 0HL_7A0S_064:HL_5J7L_198 = 0.0956HL_7A0S_064:HL_6UFM_005 = 0.2346HL_7A0S_064:HL_4V9F_067 = 0.1939HL_7A0S_064:HL_8C3A_067 = 0.1958HL_7A0S_064:HL_5TBW_066 = 0.2096HL_7A0S_064:HL_1U6B_002 = 0.3994HL_7A0S_064:HL_3R4F_005 = 0.4339HL_5J7L_198:HL_4GXY_003 = 0.5179HL_5J7L_198:HL_4PQV_002 = 0.3917HL_5J7L_198:HL_4WF9_061 = 0.1471HL_5J7L_198:HL_7A0S_064 = 0.0956HL_5J7L_198:HL_5J7L_198 = 0HL_5J7L_198:HL_6UFM_005 = 0.2215HL_5J7L_198:HL_4V9F_067 = 0.1968HL_5J7L_198:HL_8C3A_067 = 0.2202HL_5J7L_198:HL_5TBW_066 = 0.2291HL_5J7L_198:HL_1U6B_002 = 0.4383HL_5J7L_198:HL_3R4F_005 = 0.4517HL_6UFM_005:HL_4GXY_003 = 0.5086HL_6UFM_005:HL_4PQV_002 = 0.3975HL_6UFM_005:HL_4WF9_061 = 0.2561HL_6UFM_005:HL_7A0S_064 = 0.2346HL_6UFM_005:HL_5J7L_198 = 0.2215HL_6UFM_005:HL_6UFM_005 = 0HL_6UFM_005:HL_4V9F_067 = 0.1817HL_6UFM_005:HL_8C3A_067 = 0.2114HL_6UFM_005:HL_5TBW_066 = 0.2338HL_6UFM_005:HL_1U6B_002 = 0.4346HL_6UFM_005:HL_3R4F_005 = 0.3974HL_4V9F_067:HL_4GXY_003 = 0.5101HL_4V9F_067:HL_4PQV_002 = 0.4482HL_4V9F_067:HL_4WF9_061 = 0.2578HL_4V9F_067:HL_7A0S_064 = 0.1939HL_4V9F_067:HL_5J7L_198 = 0.1968HL_4V9F_067:HL_6UFM_005 = 0.1817HL_4V9F_067:HL_4V9F_067 = 0HL_4V9F_067:HL_8C3A_067 = 0.1515HL_4V9F_067:HL_5TBW_066 = 0.1787HL_4V9F_067:HL_1U6B_002 = 0.4404HL_4V9F_067:HL_3R4F_005 = 0.4544HL_8C3A_067:HL_4GXY_003 = 0.4792HL_8C3A_067:HL_4PQV_002 = 0.4106HL_8C3A_067:HL_4WF9_061 = 0.2535HL_8C3A_067:HL_7A0S_064 = 0.1958HL_8C3A_067:HL_5J7L_198 = 0.2202HL_8C3A_067:HL_6UFM_005 = 0.2114HL_8C3A_067:HL_4V9F_067 = 0.1515HL_8C3A_067:HL_8C3A_067 = 0HL_8C3A_067:HL_5TBW_066 = 0.0844HL_8C3A_067:HL_1U6B_002 = 0.3823HL_8C3A_067:HL_3R4F_005 = 0.4058HL_5TBW_066:HL_4GXY_003 = 0.4654HL_5TBW_066:HL_4PQV_002 = 0.4069HL_5TBW_066:HL_4WF9_061 = 0.2513HL_5TBW_066:HL_7A0S_064 = 0.2096HL_5TBW_066:HL_5J7L_198 = 0.2291HL_5TBW_066:HL_6UFM_005 = 0.2338HL_5TBW_066:HL_4V9F_067 = 0.1787HL_5TBW_066:HL_8C3A_067 = 0.0844HL_5TBW_066:HL_5TBW_066 = 0HL_5TBW_066:HL_1U6B_002 = 0.3878HL_5TBW_066:HL_3R4F_005 = 0.4409HL_1U6B_002:HL_4GXY_003 = 0.5842HL_1U6B_002:HL_4PQV_002 = 0.5536HL_1U6B_002:HL_4WF9_061 = 0.4256HL_1U6B_002:HL_7A0S_064 = 0.3994HL_1U6B_002:HL_5J7L_198 = 0.4383HL_1U6B_002:HL_6UFM_005 = 0.4346HL_1U6B_002:HL_4V9F_067 = 0.4404HL_1U6B_002:HL_8C3A_067 = 0.3823HL_1U6B_002:HL_5TBW_066 = 0.3878HL_1U6B_002:HL_1U6B_002 = 0HL_1U6B_002:HL_3R4F_005 = 0.511HL_3R4F_005:HL_4GXY_003 = 0.6797HL_3R4F_005:HL_4PQV_002 = 0.5974HL_3R4F_005:HL_4WF9_061 = 0.458HL_3R4F_005:HL_7A0S_064 = 0.4339HL_3R4F_005:HL_5J7L_198 = 0.4517HL_3R4F_005:HL_6UFM_005 = 0.3974HL_3R4F_005:HL_4V9F_067 = 0.4544HL_3R4F_005:HL_8C3A_067 = 0.4058HL_3R4F_005:HL_5TBW_066 = 0.4409HL_3R4F_005:HL_1U6B_002 = 0.511HL_3R4F_005:HL_3R4F_005 = 0HL_4GXY_003HL_4PQV_002HL_4WF9_061HL_7A0S_064HL_5J7L_198HL_6UFM_005HL_4V9F_067HL_8C3A_067HL_5TBW_066HL_1U6B_002HL_3R4F_005Discrepancy0.000.100.200.300.400.500.60
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