HL_4V88_068
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 4V88|1|A1|G|3116, 4V88|1|A1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_068 not in the Motif Atlas
- Homologous match to HL_5TBW_067
- Geometric discrepancy: 0.0388
- The information below is about HL_5TBW_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A1|C|3110
4V88|1|A1|U|3111
4V88|1|A1|G|3112
4V88|1|A1|A|3113
4V88|1|A1|A|3114
4V88|1|A1|C|3115
4V88|1|A1|G|3116
4V88|1|A1|C|3117
4V88|1|A1|C|3118
4V88|1|A1|U|3119
4V88|1|A1|C|3120
4V88|1|A1|U|3121
4V88|1|A1|A|3122
4V88|1|A1|A|3123
4V88|1|A1|G|3124
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BH
- 60S ribosomal protein L9-A
- Chain BO
- 60S ribosomal protein L16-A, 60S ribosomal protein L16-B
- Chain Bm
- 60S ribosomal protein L40
Coloring options: