3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
4V88|1|A1|G|3116, 4V88|1|A1|C|3120
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V88_068 not in the Motif Atlas
Homologous match to HL_5TBW_067
Geometric discrepancy: 0.0388
The information below is about HL_5TBW_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

4V88|1|A1|C|3110
4V88|1|A1|U|3111
4V88|1|A1|G|3112
4V88|1|A1|A|3113
4V88|1|A1|A|3114
4V88|1|A1|C|3115
4V88|1|A1|G|3116
4V88|1|A1|C|3117
4V88|1|A1|C|3118
4V88|1|A1|U|3119
4V88|1|A1|C|3120
4V88|1|A1|U|3121
4V88|1|A1|A|3122
4V88|1|A1|A|3123
4V88|1|A1|G|3124

Current chains

Chain A1
25S rRNA

Nearby chains

Chain BH
60S ribosomal protein L9-A
Chain BO
60S ribosomal protein L16-A, 60S ribosomal protein L16-B
Chain Bm
60S ribosomal protein L40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.221 s