HL_4V88_070

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1234

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|C|3240
4V88|1|A1|G|3241
4V88|1|A1|G|3242
4V88|1|A1|A|3243
4V88|1|A1|A|3244
4V88|1|A1|A|3245
4V88|1|A1|G|3246
4V88|1|A1|G|3247

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B