HL_4V88_082
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 4V88|1|A2|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_082 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0585
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A2|C|393
4V88|1|A2|C|394
4V88|1|A2|U|395
4V88|1|A2|G|396
4V88|1|A2|A|397
4V88|1|A2|G|398
4V88|1|A2|A|399
4V88|1|A2|A|400
4V88|1|A2|A|401
4V88|1|A2|C|402
4V88|1|A2|G|403
4V88|1|A2|G|404
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S ribosomal protein S4-A
- Chain AG
- 40S ribosomal protein S6-A
- Chain AI
- 40S ribosomal protein S8-A
- Chain AY
- 40S ribosomal protein S24-A
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