HL_4V88_084

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

4V88|1|A2|A|452, 4V88|1|A2|U|454, 4V88|1|A2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_084 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1084

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V88|1|A2|U|450
4V88|1|A2|A|451
4V88|1|A2|A|452
4V88|1|A2|U|453
4V88|1|A2|U|454
4V88|1|A2|C|455
4V88|1|A2|A|456

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AY

40S ribosomal protein S24-A