HL_4V88_087

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_087 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0704

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V88|1|A2|C|569
4V88|1|A2|A|570
4V88|1|A2|G|571
4V88|1|A2|C|572
4V88|1|A2|C|573
4V88|1|A2|G|574

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AX

40S ribosomal protein S23-A

Chain Ah

Suppressor protein STM1