HL_4V88_137

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

4V88|1|A5|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06138.1

Basepair signature

cWW-cWW-R-R-R

Number of instances in this motif group

18

Unit IDs

4V88|1|A5|C|1076
4V88|1|A5|U|1077
4V88|1|A5|U|1078
4V88|1|A5|A|1079
4V88|1|A5|A|1080
4V88|1|A5|U|1081
4V88|1|A5|U|1082
4V88|1|A5|G|1083

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DD

60S ribosomal protein L5

Chain DT

60S ribosomal protein L21-A

Chain Db

60S ribosomal protein L29