Motif HL_06138.1 Version HL_06138.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V91_008 | 4V91 | 0.5694 | 2 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | A | 285 | U | 286 | G | 287 | cWW | cwW | |
| 2 | HL_4V88_121 | 4V88 | 0.5623 | 2 | A5 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | A | 285 | U | 286 | G | 287 | cWW | cwW | |
| 3 | HL_3J7P_103 | 3J7P | 0.2623 | 0 | S2 | SSU rRNA | G | 1366 | U | 1367 | U | 1368 | A | 1369 | A | 1370 | U | 1371 | U | 1372 | C | 1373 | ncWW | ncwW | |
| 4 | HL_3J9W_025 | 3J9W | 0.2206 | 0 | T-loop related (H) | AA | SSU rRNA | G | 1099 | U | 1100 | U | 1101 | A | 1102 | A | 1103 | G | 1104 | U | 1105 | C | 1106 | cWW | cwW |
| 5 | HL_4V4Q_128 | 4V4Q | 0.1746 | 0 | T-loop related (H) | CA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW |
| 6 | HL_1FJG_025 | 1FJG | 0.1848 | 0 | T-loop related (H) | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW |
| 7 | HL_3J7A_026 | 3J7A | 0.1272 | 0 | A | SSU rRNA | G | 1411 | U | 1412 | U | 1413 | A | 1414 | A | 1415 | U | 1416 | U | 1417 | C | 1418 | cWW | cwW | |
| 8 | HL_4BTS_138 | 4BTS | 0.0000 | 0 | DA | SSU rRNA | G | 1281 | U | 1282 | U | 1283 | A | 1284 | A | 1285 | U | 1286 | U | 1287 | C | 1288 | cWW | cwW | |
| 9 | HL_5A2Q_026 | 5A2Q | 0.1348 | 0 | 2 | SSU rRNA | G | 1366 | U | 1367 | U | 1368 | A | 1369 | A | 1370 | U | 1371 | U | 1372 | C | 1373 | cWW | cwW | |
| 10 | HL_3JAM_029 | 3JAM | 0.1903 | 0 | 2 | SSU rRNA | C | 1308 | U | 1309 | U | 1310 | A | 1311 | A | 1312 | U | 1313 | U | 1314 | G | 1315 | cWW | cwW | |
| 11 | HL_4V88_215 | 4V88 | 0.2113 | 0 | T-loop related (H) | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1314 | U | 1315 | G | 1316 | cWW | cwW |
| 12 | HL_4V88_137 | 4V88 | 0.3905 | 0 | A5 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1081 | U | 1082 | G | 1083 | cWW | cwW | |
| 13 | HL_4V8P_185 | 4V8P | 0.5117 | 0 | F1 | LSU rRNA | C | 1104 | U | 1105 | U | 1106 | A | 1107 | A | 1108 | A | 1109 | U | 1110 | G | 1111 | cWW | cwW | |
| 14 | HL_4V91_024 | 4V91 | 0.5776 | 0 | T-loop related (H) | 1 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1081 | U | 1082 | G | 1083 | cWW | ncwW |
| 15 | HL_3R4F_001 | 3R4F | 0.5583 | 0 | T-loop related | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW |
| 16 | HL_3R4F_003 | 3R4F | 0.5583 | 0 | A | pRNA | A | 24||||15_545 | U | 25||||15_545 | U | 26||||15_545 | G | 27||||15_545 | A | 28||||15_545 | G | 29||||15_545 | U | 30||||15_545 | U | 31||||15_545 | cWW | cwW | |
| 17 | HL_3J9W_026 | 3J9W | 0.8106 | 0 | AA | SSU rRNA | A | 1143 | U | 1144 | U | 1145 | C | 1146 | A | 1147 | G | 1148 | U | 1149 | U | 1150 | cWW | cwW | |
| 18 | HL_3IVK_005 | 3IVK | 0.8524 | 0 | T-loop related | M | class I ligase product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUUC | 4 |
| CUUAAUUG | 4 |
| GUUAAGUC | 3 |
| UUUGGGAAUG | 2 |
| AUUGAGUU | 2 |
| CUUAAAUG | 1 |
| AUUCAGUU | 1 |
| GUUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 8 |
| UUAAGU | 3 |
| UUGGGAAU | 2 |
| UUGAGU | 2 |
| UUAAAU | 1 |
| UUCAGU | 1 |
| UUAAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- T-loop related (H) (5)
- T-loop related (2)
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.48 | Max 0.94
Coloring options: