HL_4V88_142

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

4V88|1|A5|G|1354, 4V88|1|A5|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29344.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

4V88|1|A5|U|1347
4V88|1|A5|U|1348
4V88|1|A5|G|1349
4V88|1|A5|A|1350
4V88|1|A5|U|1351
4V88|1|A5|A|1352
4V88|1|A5|U|1353
4V88|1|A5|G|1354
4V88|1|A5|A|1355
4V88|1|A5|U|1356
4V88|1|A5|G|1357

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DC

60S ribosomal protein L4-A

Chain DE

60S ribosomal protein L6-A

Chain DQ

60S ribosomal protein L18-A

Chain De

60S ribosomal protein L32