HL_4V88_154

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

4V88|1|A5|C|1846, 4V88|1|A5|G|1848, 4V88|1|A5|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55724.1

Basepair signature

cWW-R-R

Number of instances in this motif group

18

Unit IDs

4V88|1|A5|C|1844
4V88|1|A5|G|1845
4V88|1|A5|C|1846
4V88|1|A5|A|1847
4V88|1|A5|G|1848
4V88|1|A5|C|1849
4V88|1|A5|A|1850
4V88|1|A5|G|1851

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DC

60S ribosomal protein L4-A

Chain DP

60S ribosomal protein L17-A

Chain Dj

60S ribosomal protein L37-A

Chain Dl

60S ribosomal protein L39