Motif HL_55724.1 Version HL_55724.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7P_042 | 3J7P | 0.1915 | 3 | 5 | LSU rRNA | C | 2792 | G | 2793 | A | 2795 | C | 2797 | G | 2799 | cWW |
| 2 | HL_3JCS_033 | 3JCS | 0.1148 | 3 | 2 | LSU rRNA | C | 27 | G | 28 | A | 30 | C | 32 | G | 34 | cWW |
| 3 | HL_3J79_041 | 3J79 | 0.1271 | 3 | A | LSU rRNA | C | 2111 | G | 2112 | A | 2114 | C | 2116 | G | 2118 | cWW |
| 4 | HL_4V88_154 | 4V88 | 0.1294 | 3 | A5 | LSU rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 5 | HL_4V8P_200 | 4V8P | 0.1134 | 3 | F1 | LSU rRNA | C | 1868 | G | 1869 | A | 1871 | C | 1873 | G | 1875 | cWW |
| 6 | HL_5AJ0_045 | 5AJ0 | 0.1167 | 3 | A2 | LSU rRNA | C | 2771 | G | 2772 | A | 2774 | C | 2776 | G | 2778 | cWW |
| 7 | HL_4V91_041 | 4V91 | 0.1145 | 3 | 1 | LSU rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 8 | HL_4V9F_042 | 4V9F | 0.0000 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 9 | HL_5FDU_039 | 5FDU | 0.1343 | 3 | 1A | LSU rRNA | C | 1658 | G | 1659 | C | 1661 | C | 1663 | G | 1665 | cWW |
| 10 | HL_4IOA_039 | 4IOA | 0.1275 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
| 11 | HL_3J9W_076 | 3J9W | 0.1555 | 3 | BA | LSU rRNA | C | 1657 | G | 1658 | C | 1660 | C | 1662 | G | 1664 | cWW |
| 12 | HL_3J7Y_021 | 3J7Y | 0.1442 | 3 | A | LSU rRNA | C | 2428 | A | 2429 | C | 2431 | C | 2433 | G | 2435 | cWW |
| 13 | HL_4V19_020 | 4V19 | 0.1591 | 3 | A | LSU rRNA | C | 758 | A | 759 | C | 761 | C | 763 | G | 765 | cWW |
| 14 | HL_5J7L_177 | 5J7L | 0.7151 | 0 | DA | LSU rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW |
| 15 | HL_4IOA_043 | 4IOA | 0.7085 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW |
| 16 | HL_5FDU_043 | 5FDU | 0.7329 | 0 | 1A | LSU rRNA | C | 1783 | G | 1784 | C | 1785 | A | 1786 | G | 1787 | cWW |
| 17 | HL_4V9F_046 | 4V9F | 0.7400 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW |
| 18 | HL_3J9W_080 | 3J9W | 0.6941 | 0 | BA | LSU rRNA | C | 1781 | G | 1782 | C | 1783 | A | 1784 | G | 1785 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAGCAG | 4 |
| CGACACAG | 4 |
| CGCAG | 4 |
| CGCAUCAG | 3 |
| CAACACAG | 2 |
| CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGCA | 4 |
| GACACA | 4 |
| GCA | 4 |
| GCAUCA | 3 |
| AACACA | 2 |
| GAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: