HL_4V88_172

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18683.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

6

Unit IDs

4V88|1|A5|U|2724
4V88|1|A5|U|2725
4V88|1|A5|C|2726
4V88|1|A5|A|2727
4V88|1|A5|G|2728
4V88|1|A5|U|2729
4V88|1|A5|G|2730
4V88|1|A5|U|2731
4V88|1|A5|G|2732

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DQ

60S ribosomal protein L18-A

Chain DT

60S ribosomal protein L21-A

Chain Da

60S ribosomal protein L28

Chain Do

60S ribosomal protein L42-A