Motif HL_18683.1 Version HL_18683.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_218 | 4V8P | 0.3892 | 0 | F1 | LSU rRNA | U | 2713 | U | 2714 | C | 2715 | A | 2716 | G | 2717 | U | 2718 | A | 2719 | G | 2720 | G | 2721 | cWW | ncWW | |
| 2 | HL_4V88_172 | 4V88 | 0.1189 | 0 | A5 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ncwW | |
| 3 | HL_4V91_059 | 4V91 | 0.0000 | 0 | 1 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ||
| 4 | HL_3J79_058 | 3J79 | 0.2586 | 0 | A | LSU rRNA | U | 3063 | U | 3064 | C | 3065 | A | 3066 | G | 3067 | A | 3068 | A | 3069 | C | 3070 | A | 3071 | cWW | ntWH | |
| 5 | HL_3J7P_058 | 3J7P | 0.3878 | 0 | 5 | LSU rRNA | U | 4301 | U | 4302 | C | 4303 | A | 4304 | G | 4305 | U | 4306 | A | 4307 | C | 4308 | G | 4309 | cWW | ||
| 6 | HL_5AJ0_062 | 5AJ0 | 0.5443 | 0 | A2 | LSU rRNA | U | 4263 | U | 4264 | C | 4265 | A | 4266 | G | 4267 | U | 4268 | A | 4269 | C | 4270 | G | 4271 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 2 |
| UUCAGUACG | 2 |
| UUCAGUAGG | 1 |
| UUCAGAACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 2 |
| UCAGUAC | 2 |
| UCAGUAG | 1 |
| UCAGAAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.34 | Max 0.54
Coloring options: