HL_4V88_176

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

4V88|1|A5|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56406.1

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

28

Unit IDs

4V88|1|A5|A|2897
4V88|1|A5|G|2898
4V88|1|A5|C|2899
4V88|1|A5|A|2900
4V88|1|A5|G|2901
4V88|1|A5|A|2902
4V88|1|A5|A|2903
4V88|1|A5|U|2904

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DH

60S ribosomal protein L9-A

Chain Dm

60S ribosomal protein L40