HL_4V88_180

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03712.1

Basepair signature

cWW-R-R-R

Number of instances in this motif group

14

Unit IDs

4V88|1|A5|U|3068
4V88|1|A5|G|3069
4V88|1|A5|A|3070
4V88|1|A5|U|3071
4V88|1|A5|C|3072
4V88|1|A5|A|3073

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DR

60S ribosomal protein L19-A

Chain DU

60S ribosomal protein L22-A

Chain Dd

60S ribosomal protein L31-A