Motif HL_03712.1 Version HL_03712.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2NR0_003 | 2NR0 | 0.5888 | 0 | E | tRNA | C | 45|||D | A | 45|||E | A | 45|||F | U | 45|||G | A | 45|||H | G | 46|||I | cWW | |
| 2 | HL_5J7L_198 | 5J7L | 0.2553 | 0 | Ribsomal LSU H95 | DA | LSU rRNA | U | 2701 | G | 2702 | C | 2703 | C | 2704 | A | 2705 | A | 2706 | cWW |
| 3 | HL_4IOA_064 | 4IOA | 0.2190 | 0 | Ribsomal LSU H95 (H) | X | LSU rRNA | U | 2680 | A | 2681 | C | 2682 | C | 2683 | A | 2684 | A | 2685 | cWW |
| 4 | HL_3J9W_101 | 3J9W | 0.2485 | 0 | Ribsomal LSU H95 (H) | BA | LSU rRNA | U | 2730 | G | 2731 | C | 2732 | C | 2733 | A | 2734 | A | 2735 | cWW |
| 5 | HL_5AJ0_070 | 5AJ0 | 0.2716 | 0 | Ribsomal LSU H95 (H) | A2 | LSU rRNA | U | 4608 | G | 4609 | A | 4610 | G | 4611 | G | 4612 | A | 4613 | cWW |
| 6 | HL_4V9F_067 | 4V9F | 0.2021 | 0 | Ribsomal LSU H95 | 0 | LSU rRNA | C | 2737 | G | 2738 | A | 2739 | G | 2740 | A | 2741 | G | 2742 | cWW |
| 7 | HL_5AN9_026 | 5AN9 | 0.1903 | 0 | Ribsomal LSU H95 (H) | N | LSU rRNA | U | 3404 | G | 3405 | A | 3406 | C | 3407 | A | 3408 | A | 3409 | cWW |
| 8 | HL_3J79_066 | 3J79 | 0.1583 | 0 | Ribsomal LSU H95 (H) | A | LSU rRNA | U | 3453 | G | 3454 | A | 3455 | C | 3456 | A | 3457 | A | 3458 | cWW |
| 9 | HL_4V8P_226 | 4V8P | 0.0000 | 0 | Ribsomal LSU H95 (H) | F1 | LSU rRNA | U | 3057 | G | 3058 | A | 3059 | A | 3060 | A | 3061 | A | 3062 | cWW |
| 10 | HL_4V88_180 | 4V88 | 0.1513 | 0 | Ribsomal LSU H95 (H) | A5 | LSU rRNA | U | 3068 | G | 3069 | A | 3070 | U | 3071 | C | 3072 | A | 3073 | cWW |
| 11 | HL_4V91_067 | 4V91 | 0.2597 | 0 | Ribsomal LSU H95 (H) | 1 | LSU rRNA | U | 3068 | G | 3069 | A | 3070 | U | 3071 | C | 3072 | A | 3073 | cWW |
| 12 | HL_5AJ3_017 | 5AJ3 | 0.3959 | 1 | A | SSU rRNA | U | 664 | G | 666 | C | 667 | A | 668 | C | 669 | A | 670 | cWW | |
| 13 | HL_4GXY_003 | 4GXY | 0.3842 | 1 | Pseudoknot geometry | A | Cobalamin riboswitch | G | 65 | C | 67 | C | 68 | C | 69 | G | 70 | C | 71 | cWW |
| 14 | HL_1U6B_002 | 1U6B | 0.5668 | 0 | Pseudoknot geometry | B | 197-MER | C | 70 | G | 71 | C | 72 | C | 73 | C | 74 | G | 75 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCCAA | 2 |
| UGACAA | 2 |
| UGAUCA | 2 |
| CAAUAG | 1 |
| UACCAA | 1 |
| UGAGGA | 1 |
| CGAGAG | 1 |
| UGAAAA | 1 |
| UAGCACA | 1 |
| GUCCCGC | 1 |
| CGCCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCA | 2 |
| GACA | 2 |
| GAUC | 2 |
| AAUA | 1 |
| ACCA | 1 |
| GAGG | 1 |
| GAGA | 1 |
| GAAA | 1 |
| AGCAC | 1 |
| UCCCG | 1 |
| GCCC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Ribsomal LSU H95 (H) (8)
- Pseudoknot geometry (2)
- (2)
- Ribsomal LSU H95 (2)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.36 | Max 0.79
Coloring options: