HL_4V88_181

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

4V88|1|A5|G|3116, 4V88|1|A5|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69076.1

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

4V88|1|A5|C|3110
4V88|1|A5|U|3111
4V88|1|A5|G|3112
4V88|1|A5|A|3113
4V88|1|A5|A|3114
4V88|1|A5|C|3115
4V88|1|A5|G|3116
4V88|1|A5|C|3117
4V88|1|A5|C|3118
4V88|1|A5|U|3119
4V88|1|A5|C|3120
4V88|1|A5|U|3121
4V88|1|A5|A|3122
4V88|1|A5|A|3123
4V88|1|A5|G|3124

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DH

60S ribosomal protein L9-A

Chain DO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain Dm

60S ribosomal protein L40