Motif HL_69076.1 Version HL_69076.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-10 | 2-12 | 3-11 | 4-9 | 5-8 | 6-7 | 10-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_102 | 3J9W | 0.1772 | 2 | BA | LSU rRNA | C | 2774 | U | 2775 | G | 2776 | A | 2777 | A | 2778 | A | 2779 | C | 2781 | A | 2782 | U | 2783 | U | 2785 | A | 2786 | A | 2787 | G | 2788 | cWW | ntWH | ntSH | tHW | tHW | |||
| 2 | HL_4IOA_065 | 4IOA | 0.1495 | 2 | X | LSU rRNA | C | 2725 | U | 2726 | G | 2727 | A | 2728 | A | 2729 | A | 2730 | C | 2732 | A | 2733 | U | 2734 | U | 2736 | A | 2737 | A | 2738 | G | 2739 | cWW | tWH | ntSH | tHW | tHW | ntSW | cWH | |
| 3 | HL_5FDU_065 | 5FDU | 0.1331 | 2 | 1A | LSU rRNA | C | 2758 | U | 2759 | G | 2760 | A | 2761 | A | 2762 | A | 2763 | C | 2765 | A | 2766 | U | 2767 | U | 2769 | A | 2770 | A | 2771 | G | 2772 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH |
| 4 | HL_5J7L_199 | 5J7L | 0.1010 | 2 | DA | LSU rRNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH |
| 5 | HL_4V8P_227 | 4V8P | 0.1298 | 2 | F1 | LSU rRNA | C | 3099 | U | 3100 | G | 3101 | A | 3102 | A | 3103 | G | 3104 | C | 3106 | C | 3107 | U | 3108 | U | 3110 | A | 3111 | A | 3112 | G | 3113 | cWW | tWH | tSH | tHW | tHW | cWH | ||
| 6 | HL_5AN9_027 | 5AN9 | 0.1273 | 2 | N | LSU rRNA | C | 3446 | U | 3447 | G | 3448 | A | 3449 | A | 3450 | C | 3451 | C | 3453 | C | 3454 | U | 3455 | U | 3457 | A | 3458 | A | 3459 | G | 3460 | cWW | tWH | ntSH | tSH | ntHW | ntHW | tSW | cWH |
| 7 | HL_4V88_181 | 4V88 | 0.1090 | 2 | A5 | LSU rRNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH |
| 8 | HL_4V9F_068 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | C | 2780 | U | 2781 | G | 2782 | A | 2783 | A | 2784 | C | 2785 | C | 2787 | A | 2788 | U | 2789 | U | 2791 | A | 2792 | A | 2793 | G | 2794 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH |
| 9 | HL_5AJ0_071 | 5AJ0 | 0.1369 | 2 | A2 | LSU rRNA | C | 4650 | U | 4651 | G | 4652 | A | 4653 | A | 4654 | C | 4655 | C | 4657 | C | 4658 | U | 4659 | U | 4661 | A | 4662 | A | 4663 | G | 4664 | cWW | tWH | tSH | tHW | tHW | tSW | cWH | |
| 10 | HL_4V91_068 | 4V91 | 0.1555 | 2 | 1 | LSU rRNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | tWH | ntSH | tSH | tHW | ntHW | ntSW | cWH |
| 11 | HL_3J7P_067 | 3J7P | 0.1830 | 2 | 5 | LSU rRNA | C | 4688 | U | 4689 | G | 4690 | A | 4691 | A | 4692 | C | 4693 | C | 4695 | C | 4696 | U | 4697 | U | 4699 | A | 4700 | A | 4701 | G | 4702 | cWW | ntSH | tSH | ntHW | cWH | |||
| 12 | HL_3J79_067 | 3J79 | 0.2699 | 3 | A | LSU rRNA | C | 3494 | U | 3495 | G | 3496 | A | 3497 | A | 3498 | C | 3499 | C | 3501 | C | 3502 | U | 3503 | U | 3505 | A | 3507 | A | 3508 | G | 3509 | cWW | tWH | ntSH | ntSW | tHW | tHW | tSW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAACGCCUCUAAG | 5 |
| CUGAAAGCAUCUAAG | 4 |
| CUGAAGGCCUCUAAG | 1 |
| CUGAACGCAUCUAAG | 1 |
| CUGAACGCCUCUUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAACGCCUCUAA | 5 |
| UGAAAGCAUCUAA | 4 |
| UGAAGGCCUCUAA | 1 |
| UGAACGCAUCUAA | 1 |
| UGAACGCCUCUUAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (12)
- Basepair signature
- cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW
- Heat map statistics
- Min 0.08 | Avg 0.17 | Max 0.31
Coloring options: