HL_4V88_191

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases (A, C, G, U)

249U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_56241.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V88|1|A6|G|243
4V88|1|A6|A|244
4V88|1|A6|U|245
4V88|1|A6|G|246
4V88|1|A6|A|247
4V88|1|A6|U|248
4V88|1|A6|U|249
4V88|1|A6|C|250

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CG

40S ribosomal protein S6-A

Chain CL

40S ribosomal protein S11-A