HL_77436.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	3-5
1	HL_4WF9_019	4WF9	0.5737	2	Other HL	X	LSU rRNA	C	654	A	655	G	656	U	657	A	659	U	661	G	662	cWW
2	HL_6CZR_096	6CZR	0.2147	1	T-loop related	1a	SSU rRNA	G	1072	U	1073	U	1074	A	1075	A	1076	U	1078	C	1079	cWW	cwW
3	HL_5J7L_024	5J7L	0.1818	1	T-loop related	AA	SSU rRNA	G	1089	U	1090	U	1091	A	1092	A	1093	U	1095	C	1096	cWW	cwW
4	HL_4LFB_025	4LFB	0.1610	1	T-loop related	A	SSU rRNA	G	1089	U	1090	U	1091	A	1092	A	1093	U	1095	C	1096	cWW	cwW
5	HL_5TBW_008	5TBW	0.1892	3		1	LSU rRNA	U	278	U	279	U	280	G	281	G	282	U	286	G	287	cWW	cwW
6	HL_8C3A_008	8C3A	0.1920	3		1	LSU rRNA	U	278	U	279	U	280	G	281	G	282	U	286	G	287	cWW	cwW
7	HL_3R4F_001	3R4F	0.2345	1	T-loop related	A	pRNA	A	24	U	25	U	26	G	27	A	28	U	30	U	31	cWW	cwW
8	HL_5TBW_024	5TBW	0.1745	1		1	LSU rRNA	C	1076	U	1077	U	1078	A	1079	A	1080	U	1082	G	1083	cWW	cwW
9	HL_8C3A_024	8C3A	0.1482	1		1	LSU rRNA	C	1072	U	1073	U	1074	A	1075	A	1076	U	1078	G	1079	cWW	cwW
10	HL_4V88_215	4V88	0.1214	1	T-loop related (H)	A6	SSU rRNA	C	1309	U	1310	U	1311	A	1312	A	1313	U	1315	G	1316	cWW	cwW
11	HL_8C3A_220	8C3A	0.0000	1	T-loop related	CM	SSU rRNA	C	1294	U	1295	U	1296	A	1297	A	1298	U	1300	G	1301	cWW	cwW
12	HL_4V9F_039	4V9F	0.4918	0	Other HL	0	LSU rRNA	C	1594	G	1595	U	1596	A	1597	A	1598	U	1599	G	1600	cWW
13	HL_4V88_191	4V88	0.4610	1	T-loop with 1 bulged base	A6	SSU rRNA	G	243	A	244	U	245	G	246	A	247	U	248	C	250	cWW
14	HL_8C3A_197	8C3A	0.4596	1	T-loop with 1 bulged base	CM	SSU rRNA	G	241	A	242	U	243	G	244	A	245	U	246	C	248	cWW
15	HL_3D2V_002	3D2V	0.4522	1	T-loop related	A	TPP riboswitch (THI element)	G	54	G	55	U	56	A	57	A	58	U	59	C	61	cWW
16	HL_3K0J_002	3K0J	0.4435	1	T-loop related	E	RNA (87-MER)	G	66	A	67	U	68	A	69	A	70	U	71	C	73	cWW
17	HL_7TZS_002	7TZS	0.4490	1	T-loop related	X	TPP riboswitch (THI element)	G	66	A	67	U	68	A	69	A	70	U	71	C	73	cWW
18	HL_3IVK_005	3IVK	0.5294	1	T-loop related	M	class I ligase product	G	92	U	93	U	94	A	95	A	96	A	98	C	99	cWW	ntSH
19	HL_2D6F_005	2D6F	0.6238	2	tRNA anticodon loop	F	tRNA	G	931	C	932	U	933	G	936	G	937	A	938	C	939	cWW	cWW
20	HL_4JYZ_002	4JYZ	0.5637	2	tRNA anticodon loop	B	tRNA	U	931	OMU	932	U	933	U	935	2MA	937	PSU	938	A	939	cWW		ntSH
21	HL_4JXZ_002	4JXZ	0.5560	2	tRNA anticodon loop	B	tRNA	U	931	U	932	U	933	U	935	A	937	U	938	A	939	cWW		ntSH
22	HL_1QTQ_002	1QTQ	0.5480	2	tRNA anticodon loop	B	tRNA	A	931	U	932	U	933	U	935	A	937	U	938	U	939	cWW		tSH
23	HL_6GSK_204	6GSK	0.6753	2	T-loop	1K	tRNA	G	53	5MU	54	PSU	55	G	57	A	58	U	60	C	61	ncWW		ntWH

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUAAUUG	4
GUUAAGUC	3
UUUGGGAAUG	2
GAUGAUUC	2
GAUAAUGC	2
CAGUAAAUG	1
AUUGAGUU	1
CGUAAUG	1
GGUAAUGC	1
GUUAAAAC	1
GCUUUGGAC	1
UUUGA	1
UUUUUGAUA	1
AUUCUGAUU	1
G(5MU)(PSU)CGACUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAAUU	4
UUAAGU	3
UUGGGAAU	2
AUGAUU	2
AUAAUG	2
AGUAAAU	1
UUGAGU	1
GUAAU	1
GUAAUG	1
UUAAAA	1
CUUUGGA	1
(OMU)U(1RN)UG(2MA)(PSU)	1
UUUUGAU	1
UUCUGAU	1
(5MU)(PSU)CGACU	1

Release history

Release	3.90
Date	2024-11-06
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_77436.2 Version HL_77436.2 of this group appears in releases 3.90 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_77436.2 Version HL_77436.2 of this group appears in releases 3.90 to 3.90

Download

Csv

Json