HL_4V88_193

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

4V88|1|A6|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4V88|1|A6|G|330
4V88|1|A6|A|331
4V88|1|A6|U|332
4V88|1|A6|A|333
4V88|1|A6|G|334
4V88|1|A6|U|335
4V88|1|A6|G|336
4V88|1|A6|G|337
4V88|1|A6|C|338

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CI

40S ribosomal protein S8-A

Chain CL

40S ribosomal protein S11-A