HL_4V88_209

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32255.1

Basepair signature

cWW-tWW-F-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V88|1|A6|U|1055
4V88|1|A6|U|1056
4V88|1|A6|U|1057
4V88|1|A6|U|1058
4V88|1|A6|U|1059
4V88|1|A6|U|1060
4V88|1|A6|A|1061
4V88|1|A6|A|1062
4V88|1|A6|U|1063
4V88|1|A6|G|1064

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CB

40S ribosomal protein S1-A

Chain Cb

40S ribosomal protein S27-A