HL_4V88_212

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases (A, C, G, U)

1196A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73530.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V88|1|A6|G|1188
4V88|1|A6|A|1189
4V88|1|A6|C|1190
4V88|1|A6|U|1191
4V88|1|A6|C|1192
4V88|1|A6|A|1193
4V88|1|A6|A|1194
4V88|1|A6|C|1195
4V88|1|A6|A|1196
4V88|1|A6|C|1197

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CP

40S ribosomal protein S15

Chain CQ

40S ribosomal protein S16-A

Chain CU

40S ribosomal protein S20

Chain Cd

40S ribosomal protein S29-A

Chain Ch

Suppressor protein STM1