Motif HL_50779.1 Version HL_50779.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8C3A_217 | 8C3A | 0.2147 | 1 | CM | SSU rRNA | G | 1173 | A | 1174 | C | 1175 | U | 1176 | C | 1177 | A | 1178 | A | 1179 | C | 1180 | C | 1182 | cWW |
2 | HL_4V88_212 | 4V88 | 0.2164 | 1 | A6 | SSU rRNA | G | 1188 | A | 1189 | C | 1190 | U | 1191 | C | 1192 | A | 1193 | A | 1194 | C | 1195 | C | 1197 | cWW |
3 | HL_5J7L_021 | 5J7L | 0.1220 | 1 | AA | SSU rRNA | G | 963 | A | 964 | U | 965 | 2MG | 966 | 5MC | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW |
4 | HL_4LFB_021 | 4LFB | 0.0000 | 1 | A | SSU rRNA | G | 963 | A | 964 | A | 965 | M2G | 966 | 5MC | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW |
5 | HL_6CZR_092 | 6CZR | 0.1731 | 1 | 1a | SSU rRNA | G | 941 | A | 942 | A | 943 | M2G | 944 | 5MC | 945 | A | 946 | A | 947 | C | 948 | C | 950 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GACUCAACAC | 2 |
GAAAACGC | 2 |
GAUAACGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
ACUCAACA | 2 |
AA(M2G)(5MC)AACG | 2 |
AU(2MG)(5MC)AACG | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.17 | Max 0.26
Coloring options: