3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUUGAGAGCU
Length
10 nucleotides
Bulged bases
4V88|1|A6|G|1243, 4V88|1|A6|G|1245
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_66836.1
Basepair signature
cWW-cWS-R
Number of instances in this motif group
11

Unit IDs

4V88|1|A6|A|1238
4V88|1|A6|U|1239
4V88|1|A6|U|1240
4V88|1|A6|G|1241
4V88|1|A6|A|1242
4V88|1|A6|G|1243
4V88|1|A6|A|1244
4V88|1|A6|G|1245
4V88|1|A6|C|1246
4V88|1|A6|U|1247

Current chains

Chain A6
18S rRNA

Nearby chains

Chain CP
40S ribosomal protein S15
Chain Cd
40S ribosomal protein S29-A
Chain Cf
40S ribosomal protein S31

Coloring options:

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