HL_4V88_213

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

4V88|1|A6|G|1243, 4V88|1|A6|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66836.1

Basepair signature

cWW-cWS-R

Number of instances in this motif group

11

Unit IDs

4V88|1|A6|A|1238
4V88|1|A6|U|1239
4V88|1|A6|U|1240
4V88|1|A6|G|1241
4V88|1|A6|A|1242
4V88|1|A6|G|1243
4V88|1|A6|A|1244
4V88|1|A6|G|1245
4V88|1|A6|C|1246
4V88|1|A6|U|1247

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CP

40S ribosomal protein S15

Chain Cd

40S ribosomal protein S29-A

Chain Cf

40S ribosomal protein S31