HL_4V88_216

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61849.1

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V88|1|A6|C|1359
4V88|1|A6|A|1360
4V88|1|A6|U|1361
4V88|1|A6|U|1362
4V88|1|A6|U|1363
4V88|1|A6|G|1364

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CF

40S ribosomal protein S5

Chain CQ

40S ribosomal protein S16-A

Chain CT

40S ribosomal protein S19-A