HL_4V88_226

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

4V88|1|A8|A|111, 4V88|1|A8|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27052.1

Basepair signature

cWW-R-R

Number of instances in this motif group

7

Unit IDs

4V88|1|A8|C|108
4V88|1|A8|A|109
4V88|1|A8|C|110
4V88|1|A8|A|111
4V88|1|A8|U|112
4V88|1|A8|U|113
4V88|1|A8|G|114

Current chains

Chain A8

5.8S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain DX

60S ribosomal protein L25

Chain Dj

60S ribosomal protein L37-A

Chain Dl

60S ribosomal protein L39