Motif HL_27052.1 Version HL_27052.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5FDU_006 | 5FDU | 0.6186 | 1 | 1A | LSU rRNA | A | 214 | G | 215 | A | 216 | A | 217 | U | 219 | cWW | ntSH |
| 2 | HL_4IOA_007 | 4IOA | 0.6067 | 1 | X | LSU rRNA | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW | |
| 3 | HL_3J79_073 | 3J79 | 0.0000 | 2 | C | 5.8S rRNA | U | 111 | A | 112 | A | 113 | C | 115 | A | 117 | cWW | |
| 4 | HL_4V88_226 | 4V88 | 0.1535 | 2 | A8 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | |
| 5 | HL_4V91_077 | 4V91 | 0.2296 | 2 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | |
| 6 | HL_4V8P_157 | 4V8P | 0.3783 | 2 | E2 | 5.8S rRNA | C | 109 | A | 110 | A | 111 | U | 113 | G | 115 | cWW | |
| 7 | HL_4BTS_113 | 4BTS | 0.6234 | 1 | DA | SSU rRNA | C | 185 | C | 186 | U | 187 | G | 188 | G | 190 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAUUG | 2 |
| AGAAAU | 1 |
| AGAAUU | 1 |
| UAAACUA | 1 |
| CAAGUGG | 1 |
| CCUGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUU | 2 |
| GAAA | 1 |
| GAAU | 1 |
| AAACU | 1 |
| AAGUG | 1 |
| CUGC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: