HL_4V88_241

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_241 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.5885

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V88|1|A5|C|1759
4V88|1|A5|A|1760
4V88|1|A5|C|1761
4V88|1|A5|C|1762
4V88|1|A5|U|1763
4V88|1|A5|U|1764
4V88|1|A5|U|1765
4V88|1|A5|G|1766

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DR

60S ribosomal protein L19-A

Chain DU

60S ribosomal protein L22-A

Chain DX

60S ribosomal protein L25