HL_4V89_048

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V89|1|BA|U|546, 4V89|1|BA|A|547, 4V89|1|BA|G|548, 4V89|1|BA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_048 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.2786

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V89|1|BA|G|543
4V89|1|BA|C|544
4V89|1|BA|U|545
4V89|1|BA|U|546
4V89|1|BA|A|547
4V89|1|BA|G|548
4V89|1|BA|G|549
4V89|1|BA|C|550

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BV

50S ribosomal protein L21