HL_4V89_055

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V89|1|BA|A|781, 4V89|1|BA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_055 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1359

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V89|1|BA|U|779
4V89|1|BA|G|780
4V89|1|BA|A|781
4V89|1|BA|A|782
4V89|1|BA|A|783
4V89|1|BA|G|784
4V89|1|BA|G|785

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2