HL_4V89_063

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_063 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.0907

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V89|1|BA|U|1222
4V89|1|BA|G|1223
4V89|1|BA|U|1224
4V89|1|BA|G|1225
4V89|1|BA|A|1226
4V89|1|BA|G|1227

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L15

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21