HL_4V89_068

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4V89|1|BA|A|1453, 4V89|1|BA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_068 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.2318

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V89|1|BA|C|1451
4V89|1|BA|G|1452
4V89|1|BA|A|1453
4V89|1|BA|C|1454
4V89|1|BA|G|1455
4V89|1|BA|G|1456
4V89|1|BA|U|1457
4V89|1|BA|U|1458
4V89|1|BA|G|1459

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L17