#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 31-3
1 HL_9C2K_0039C2K0.30092RRev Response ElementC20A22G24cWW
2 HL_9DFE_0509DFE0.290531A LSU rRNAC2205A2208G2219cWW
3 HL_8VM9_0058VM90.26462REnterovirus 5' cloverleaf cis-acting replication elementC34U36G38cWW
4 HL_9PN5_0049PN50.15412A1 LSU rRNAC132U134G136cWW
5 HL_8OI5_0048OI50.084021 LSU rRNAC131U133G135cWW
6 HL_9M6C_0029M6C0.00001BRNA (32-MER)C16A18G19cWW
7 HL_8VM8_0028VM80.13152Mini UNCGREnterovirus 5' cloverleaf cis-acting replication elementC39U41G43cWW
8 HL_9PN5_0669PN50.17981A1 LSU rRNAC3194U3196G3197cWW
9 HL_9E6Q_0299E6Q0.151321 LSU rRNAC1299U1301G1303cWW
10 HL_6U8D_0036U8D0.23901AJIIIabc RNA (68-MER)C232U234G235cWW
11 HL_2UWM_0022UWM0.23351DRNA (23-mer)G22U24C25cWW
12 HL_6M0X_0026M0X0.28331BRNA (71-MER)U56C58A59cWW
13 HL_5CCB_0025CCB0.18932N tRNAU33U35A37cWW
14 HL_9D9P_0029D9P0.18802REnterovirus 5' cloverleaf cis-acting replication elementC39U41G43cWW
15 HL_8B0X_0948B0X0.28781a LSU rRNAC2800U2802G2803cWW
16 HL_4L8H_0014L8H0.18882Mini UNCGRRNA operator hairpinC9A11G13cWW
17 HL_9PN5_0699PN50.19021A1 LSU rRNAC3350U3352G3353cWW
18 HL_8OI5_0678OI50.27411Mini UNCG (H)1 LSU rRNAC3315U3317G3318cWW
19 HL_9SUM_0649SUM0.25331A LSU rRNAC3238U3240G3241cWW
20 HL_2B3J_0032B3J0.31303Mini UNCG with extended bulgeGanticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)C32G36G37cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG5
CAUUG3
CAAUG1
CGGAUG1
CUUCG1
CUUUG1
CUAG1
CGUUG1
CGUG1
GGUC1
UUCA1
UUUUA1
CUAAG1
CUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
UU5
AUU3
UUU2
GU2
AAU1
GGAU1
UUC1
UA1
GUU1
UC1
UAA1
U(P5P)CG1

Release history

Release4.15
Date2026-10-07
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (16)
  • Mini UNCG (2)
  • Mini UNCG with extended bulge (1)
  • Mini UNCG (H) (1)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.05 | Avg 0.30 | Max 0.94
    Help

    Coloring options:

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