HL_4V89_089

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_089 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0905

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V89|1|BA|U|2356
4V89|1|BA|G|2357
4V89|1|BA|A|2358
4V89|1|BA|C|2359
4V89|1|BA|G|2360
4V89|1|BA|G|2361

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain B7

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15