HL_4V89_108

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCCUCGCGG

Length

9 nucleotides

Bulged bases

4V89|1|BA|U|1729, 4V89|1|BA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_108 not in the Motif Atlas

Geometric match to HL_8P9A_127

Geometric discrepancy: 0.3367

The information below is about HL_8P9A_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41464.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V89|1|BA|C|1726
4V89|1|BA|C|1727
4V89|1|BA|C|1728
4V89|1|BA|U|1729
4V89|1|BA|C|1730
4V89|1|BA|G|1731
4V89|1|BA|C|1732
4V89|1|BA|G|1733
4V89|1|BA|G|1734

Current chains

Chain BA

23S rRNA

Nearby chains