HL_8P9A_127

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases

8P9A|1|AR|U|689, 8P9A|1|AR|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41464.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|AR|G|686
8P9A|1|AR|U|687
8P9A|1|AR|G|688
8P9A|1|AR|U|689
8P9A|1|AR|A|690
8P9A|1|AR|A|691
8P9A|1|AR|A|692
8P9A|1|AR|A|693
8P9A|1|AR|C|694

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CF

60S ribosomal protein L4-A

Chain CN

60S ribosomal protein L13-A

Chain CP

60S ribosomal protein L15-A

Chain DA

60S ribosomal protein L26-A