HL_4V8A_004
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGGAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8A_004 not in the Motif Atlas
- Homologous match to HL_7RQB_004
- Geometric discrepancy: 0.2184
- The information below is about HL_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_79921.3
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 15
Unit IDs
4V8A|1|AA|G|139
4V8A|1|AA|G|139|||A
4V8A|1|AA|G|140
4V8A|1|AA|A|141
4V8A|1|AA|A|142
4V8A|1|AA|C|142|||A
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L29
- Chain AX
- 50S ribosomal protein L23
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