HL_4V8A_009

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V8A|1|AA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_009 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0704

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V8A|1|AA|U|305
4V8A|1|AA|U|306
4V8A|1|AA|G|307
4V8A|1|AA|G|308
4V8A|1|AA|G|309
4V8A|1|AA|A|310
4V8A|1|AA|A|311
4V8A|1|AA|G|312

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AY

50S ribosomal protein L24