HL_4V8A_041
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUCGG
- Length
- 6 nucleotides
- Bulged bases
- 4V8A|1|AA|U|1693
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8A_041 not in the Motif Atlas
- Homologous match to HL_7RQB_042
- Geometric discrepancy: 0.0704
- The information below is about HL_7RQB_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03562.2
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 56
Unit IDs
4V8A|1|AA|C|1691
4V8A|1|AA|U|1692
4V8A|1|AA|U|1693
4V8A|1|AA|C|1694
4V8A|1|AA|G|1695
4V8A|1|AA|G|1696
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L2
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: