3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
4V8A|1|AA|U|1693
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8A_041 not in the Motif Atlas
Homologous match to HL_7RQB_042
Geometric discrepancy: 0.0704
The information below is about HL_7RQB_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03562.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
56

Unit IDs

4V8A|1|AA|C|1691
4V8A|1|AA|U|1692
4V8A|1|AA|U|1693
4V8A|1|AA|C|1694
4V8A|1|AA|G|1695
4V8A|1|AA|G|1696

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain AD
50S ribosomal protein L2
Chain DA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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