HL_4V8A_042

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

4V8A|1|AA|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_042 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.0938

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

4V8A|1|AA|U|1720
4V8A|1|AA|G|1721
4V8A|1|AA|A|1722
4V8A|1|AA|U|1739
4V8A|1|AA|G|1740
4V8A|1|AA|A|1741
4V8A|1|AA|G|1742

Current chains

Chain AA

23S ribosomal RNA

Nearby chains