HL_4V8A_149

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V8A|1|CA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_149 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1575

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V8A|1|CA|C|419
4V8A|1|CA|U|420
4V8A|1|CA|U|421
4V8A|1|CA|C|422
4V8A|1|CA|G|423
4V8A|1|CA|G|424

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CD

30S ribosomal protein S4