HL_4V8A_159

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4V8A|1|CA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8A_159 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1669

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8A|1|CA|G|963
4V8A|1|CA|A|964
4V8A|1|CA|A|965
4V8A|1|CA|G|966
4V8A|1|CA|C|967
4V8A|1|CA|A|968
4V8A|1|CA|A|969
4V8A|1|CA|C|970
4V8A|1|CA|G|971
4V8A|1|CA|C|972

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14