HL_4V8B_041
3D structure
- PDB id
- 4V8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8B_041 not in the Motif Atlas
- Geometric match to HL_4V9K_034
- Geometric discrepancy: 0.3132
- The information below is about HL_4V9K_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4V8B|1|AD|G|32
4V8B|1|AD|C|33
4V8B|1|AD|U|34
4V8B|1|AD|C|35
4V8B|1|AD|A|36
4V8B|1|AD|U|37
4V8B|1|AD|A|38
4V8B|1|AD|A|39
4V8B|1|AD|C|40
Current chains
- Chain AD
- TRNA-FMET
Nearby chains
- Chain A1
- MRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AC
- Transfer RNA; tRNA
- Chain AJ
- 30S RIBOSOMAL PROTEIN S7
- Chain AN
- 30S RIBOSOMAL PROTEIN S11
Coloring options: