HL_4V8B_059

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8B_059 not in the Motif Atlas

Geometric match to HL_4V88_218

Geometric discrepancy: 0.2059

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8B|1|BA|C|544
4V8B|1|BA|G|545
4V8B|1|BA|C|546
4V8B|1|BA|A|547
4V8B|1|BA|A|548
4V8B|1|BA|G|549

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B2

50S ribosomal protein L21

Chain BM

50S ribosomal protein L13