HL_4V8B_245

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

4V8B|1|DA|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8B_245 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5672

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V8B|1|DA|G|1091
4V8B|1|DA|C|1092
4V8B|1|DA|G|1093
4V8B|1|DA|U|1094
4V8B|1|DA|A|1095
4V8B|1|DA|A|1096
4V8B|1|DA|U|1097
4V8B|1|DA|A|1098
4V8B|1|DA|G|1099
4V8B|1|DA|C|1100

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DH

50S ribosomal protein L6