HL_4V8C_005

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_005 not in the Motif Atlas

Geometric match to HL_8S95_003

Geometric discrepancy: 0.3845

The information below is about HL_8S95_003

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V8C|1|AA|C|155
4V8C|1|AA|U|161
4V8C|1|AA|U|162
4V8C|1|AA|U|163
4V8C|1|AA|U|164
4V8C|1|AA|U|165
4V8C|1|AA|G|171

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AZ

50S ribosomal protein L28